Bioinformatics

I've been teaching bioinformatics since 2014, and I really enjoy this work! Below are course materials I've written over the last few years. Please feel free to use with attribution!

In September of 2021, I developed material for a course on single cell RNA-seq experimental design and analysis for the American Heart Association's Vascular Discovery conference. Course materials are linked below:
In October 2020, I was fortunate to be able to do two primers for the Medical and Population Genetics group at the Broad Institute on bulk RNA-sequencing best practices! Youtube videos are linked below:
The Terra tutorial mentioned is located here, and should be open access with a gmail email address.

During the Fall of 2019, and over the first half of 2020, I informally taught a course on computational biology (link requires a Broad email address to access). During those sessions, we covered the following topics (links are to overview PDFs, you can use these if you credit me!): Since I work with clinicians in my day to day work, Dr. Emelia Benjamin requested that I write and present a talk on "Epigenomics for Everyone", which is linked here. For several years at UT Austin, I was a co-instructor (with the wonderful Anna Battenhouse) for the Big Data Summer School course "Core Next Generation Sequencing Tools." I've also co-taught courses on ChIP-seq and MySQL.